DEBE-DB (Differential-Equation-Based Edge database)

    The DEBE-DB contains 12,995 candidates for edges
(gene interactions) predicted using a fitting analysis of
genome-wide temporal expression profiles in the S-system.
The database is composed of four lots of data corresponding
to two biological replicates and two algorithm parameters.
Z-scores were calculated for the edges based on the
goodness-of-fit at the fitting stage.

DEBE-DB Help

Analyzed Networks

Search target

Network

No. of nodes / edges

Organism

Experiment

Cell

Sample (max.fan-in)

No. of time points

Data source

qRTP_R1_1_1

90 / 3148

Homo sapiens

PMA

THP-1

RIKEN1 (1)

10

qRT-PCR

qRTP_R3_1_1

90 / 3338

Homo sapiens

PMA

THP-1

RIKEN3 (1)

10

qRT-PCR

qRTP_R1_2_1

90 / 3138

Homo sapiens

PMA

THP-1

RIKEN1 (2)

10

qRT-PCR

qRTP_R3_2_1

90 / 3371

Homo sapiens

PMA

THP-1

RIKEN3 (2)

10

qRT-PCR


Search Significant Interactions

Search interactions including a specific gene.
Check search targets, select 'From' or 'To', and optionally input 'Description (Gene symbol, etc.)', 'Element (Gene) number', a threshold of 'Z-score' and '+/- of the interaction'.
Search interactions detected in two different networks and including common from/to genes.
Check two search targets and input a threshold of 'Z-score'.
From    To
Description (Gene symbol, etc.):
Element number:
Z-score >
Activate(+)    Inhibit(-)

Download the Network Drawing Software  (?)

DebeViewer

Disclaimer and Liability (Database)

The authors make no representations or warranties regarding the content or accuracy of the information and also make no represents or warranties of merchantability or fitness for a particular purpose and accept no responsibility for any consequences of the receipt or use of the information.
This database was developed by the National Institute of Radiological Sciences, and Mitsubishi Space Software Co., Ltd., as a collaborative research in the Genome Network Project organized by the Ministry of Education, Culture, Sports, Science and Technology, Japan.
If you have any questions or comments, please send email to Toshiyuki Saito at .